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Coordinates schemas

Table of contents

  1. External XYZ absolute
  2. Stereotaxic Bregma absolute
  3. Stereotaxic Bregma brain surface
  4. Stereotaxic Lambda absolute
  5. Stereotaxic Lambda brain surface
  6. Stereotaxic XY surface
  7. Stereotaxic XYZ absolute

External XYZ absolute

{
    "type": "object",
    "title": "External XYZ absolute",
    "properties": {
        "x": {
            "title": "X coordinate (m)",
            "brief": "Y",
            "units": "mm",
            "type": "number"

        },
        "y": {
            "title": "Y coordinate (m)",
            "brief": "Y",
            "units": "mm",
            "type": "number"
        },
        "z": {
            "title": "Z coordinates (m)",
            "brief": "Z",
            "units": "mm",
            "type": "number"
        },
        "xAngle": {
            "title": "X angle (degrees)",
            "brief": "X angle",
            "units": "degrees",
            "type": "number"
        },
        "yAngle": {
            "title": "Y angle (degrees)",
            "brief": "Y angle",
            "units": "degrees",
            "type": "number"
        },
         "zAngle": {
            "title": "Z angle (degrees)",
            "brief": "Z angle",
            "units": "degrees",
            "type": "number"
        }
    }
}

Example of JSON according to this schema

{
    "x": 0,
    "y": 0,
    "z": 1,
    "xAngle": 37,
    "yAngle": 21,
    "zAngle": 23
}

Stereotaxic Bregma absolute

{
    "type": "object",
    "title": "Stereotaxic Bregma absolute",
    "properties": {
        "apCoordinates": {
            "title": "AP coordinates (mm)",
            "brief": "AP",
            "type": "number"
        },
        "mlCoordinates": {
            "title": "ML coordinates (mm)",
            "brief": "ML",
            "type": "number"
        },
        "dvCoordinates": {
            "title": "DV coordinates (mm)",
            "brief": "DV",
            "type": "number"
        },
        "apAngle": {
            "title": "AP angle (degrees)",
            "brief": "AP angle",
            "type": "number"
        },
        "mlAngle": {
            "title": "ML angle (degrees)",
            "brief": "ML angle",
            "type": "number"
        },
        "dvAngle": {
            "title": "DV angle (degrees)",
            "brief": "DV angle",
            "type": "number"
        }
    }
}

Example of JSON according to this schema

{
    "apCoordinates": 4.7,
    "mlCoordinates": 4,
    "dvCoordinates": 23.2,
    "apAngle": 5,
    "mlAngle": 5,
    "dvAngle": 0
}

Stereotaxic Bregma brain surface

{
    "type": "object",
    "title": "Stereotaxic Bregma brain surface",
    "properties": {
        "apCoordinates": {
            "title": "AP coordinates (mm)",
            "brief": "AP",
            "type": "number"
        },
        "mlCoordinates": {
            "title": "ML coordinates (mm)",
            "brief": "ML",
            "type": "number"
        },
        "depth": {
            "title": "Depth (mm)",
            "brief": "Depth",
            "type": "number"
        },
        "rotation": {
            "title": "Rotation (degrees)",
            "brief": "Rotation",
            "type": "number"
        },
        "apAngle": {
            "title": "AP angle (degrees)",
            "brief": "AP angle",
            "type": "number"
        },
        "mlAngle": {
            "title": "ML angle (degrees)",
            "brief": "ML angle",
            "type": "number"
        }
    }
}

Example of JSON according to this schema

{
    "apCoordinates": 0.4,
    "mlCoordinates": 1.1,
    "depth": 12,
    "rotation": 0,
    "apAngle": 15,
    "mlAngle": 15
}

Stereotaxic Lambda absolute

{
    "type": "object",
    "title": "Stereotaxic Lambda absolute",
    "properties": {
        "apCoordinates": {
            "title": "AP coordinates (mm)",
            "brief": "AP",
            "type": "number"
        },
        "mlCoordinates": {
            "title": "ML coordinates (mm)",
            "brief": "ML",
            "type": "number"
        },
        "dvCoordinates": {
            "title": "DV coordinates (mm)",
            "brief": "DV",
            "type": "number"
        },
        "apAngle": {
            "title": "AP angle (degrees)",
            "brief": "AP angle",
            "type": "number"
        },
        "mlAngle": {
            "title": "ML angle (degrees)",
            "brief": "ML angle",
            "type": "number"
        },
        "dvAngle": {
            "title": "DV angle (degrees)",
            "brief": "CV angle",
            "type": "number"
        }
    }
}

Example of JSON according to this schema

{
    "apCoordinates": 4.7,
    "mlCoordinates": 4,
    "dvCoordinates": 23.2,
    "apAngle": 5,
    "mlAngle": 5,
    "dvAngle": 0
}

Stereotaxic Lambda brain surface

{
    "type": "object",
    "title": "Stereotaxic Lambda brain surface",
    "properties": {
        "apCoordinates": {
            "title": "AP coordinates (mm)",
            "brief": "AP",
            "type": "number" 
        },
        "mlCoordinates": {
            "title": "ML coordinates (mm)",
            "brief": "ML",
            "type": "number"
        },
        "depth": {
            "title": "Depth (mm)",
            "brief": "Depth",
            "type": "number"
        },
        "rotation": {
            "title": "Rotation (degrees)",
            "brief": "Rotation",
            "type": "number"
        },
        "apAngle": {
            "title": "AP angle (degrees)",
            "brief": "AP angle",
            "type": "number"
        },
        "mlAngle": {
            "title": "ML angle (degrees)",
            "brief": "ML angle",
            "type": "number"
        }
    }
}

Example of JSON according to this schema

{
    "apCoordinates": 0.4,
    "mlCoordinates": 1.1,
    "depth": 12,
    "rotation": 0,
    "apAngle": 15,
    "mlAngle": 15
}

Stereotaxic XY surface

{
    "type": "object",
    "title": "Stereotaxic XY surface",
    "properties": {
        "x": {
            "title": "X coordinate (mm)",
            "brief": "X",
            "type": "number"
        },
        "y": {
            "title": "Y coordinate (mm)",
            "brief": "Y",
            "type": "number"
        },
        "xAngle": {
            "title": "X angle (degrees)",
            "brief": "X angle",
            "type": "number"
        },
        "yAngle": {
            "title": "Y angle (degrees)",
            "brief": "Y angle",
            "type": "number"
        },
        "depth": {
            "title": "Depth (mm)",
            "brief": "Depth",
            "type": "number"
        },
        "rotation": {
            "title": "Rotation (degrees)",
            "brief": "Rotation",
            "type": "number"
        }
    }
}

Example of JSON according to this schema

{
    "x": 0, 
    "y": 4, 
    "xAngle": 30, 
    "yAngle": 15, 
    "depth": 0.1, 
    "rotation": 10
}

Stereotaxic XYZ absolute

{
    "type": "object",
    "title": "Stereotaxic XYZ absolute",
    "properties": {
        "x": {
            "title": "X coordinate (mm)",
            "brief": "X",
            "type": "number"
        },
        "y": {
            "title": "Y coordinate (mm)",
            "brief": "Y",
            "type": "number"
        },
        "z": {
            "title": "Z coordinates (mm)",
            "brief": "Z",
            "type": "number"
        },
        "xAngle": {
            "title": "X angle (degrees)",
            "brief": "X angle",
            "type": "number"
        },
        "yAngle": {
            "title": "Y angle (degrees)",
            "brief": "Y angle",
            "type": "number"
        },
         "zAngle": {
            "title": "Z angle (degrees)",
            "brief": "Z angle",
            "type": "number"
        }
    }
}

Example of JSON according to this schema

{
    "x": 0,
    "y": 0,
    "z": 1,
    "xAngle": 37,
    "yAngle": 21,
    "zAngle": 23
}