Procedure model
Table of contents
Introduction
Procedures covers surgical procedures and other methods that allows you to track or record from a subject(s). Procedures have type-specific fields that are tailored to various procedure-types. The types of procedures currently supported by BrainSTEM are listed further down the page. An procedure is described by the fields in the next section.
Fields
| Field | Description |
|---|---|
| Type | the type of procedure (required). See options below |
| Notee | Notes to the procedure (max length: 500) |
| Subject | The subject the procedure was performed on (required) |
| Date and time | Date and time the procedure was performed (e.g. “2023-03-22”) |
| Consumable | Consumable used for the procedure |
| Hardware device | Hardware device used to perform the procedure |
| Brain region | Target brain region where the procedure was performed |
| Coordinates system | Coordinate system (required). See options below |
| Type details | There are also a number of type specific fields. See options below |
Types of procedures
These are the available Type options for Procedure:
- Optic fiber implant
- Single wire electrode
- Silicon probe implant
- Tetrode wire electrode
- Virus injection
A detailed list of the type-specific fields, can be found in the procedure type page.
Below are the available Coordinates system options for Procedure:
| Type | Description |
|---|---|
| Stereotaxic Bregma absolute | Stereotaxic coordinates with Bregma as the origin. AP, ML, DV are used as coordinates |
| Stereotaxic Bregma brain surface | Stereotaxic coordinates with Bregma as the origin. AP, ML and depth are used as coordinates |
| Stereotaxic Lambda absolute | Stereotaxic coordinates with Lambda as the origin. AP, ML, DV are used as coordinates |
| Stereotaxic Lampda brain surface | Stereotaxic coordinates with Lambda as the origin. AP, ML and depth are used as coordinates |
| Stereotaxic X-Y-Z | Stereotaxic coordinates using the Allen Institutes’s absolute X-Y-Z as coordinates |
| Stereotaxic X-Y Surface | Stereotaxic coordinates using the Allen Institutes’s absolute X-Y-Surface depth as coordinates |
A detailed list of the fields in Coordinates system, can be found in the Coordinate system page.
Permissions
Procedures inherit permissions through the subject associated with it.
Visit the [permissions page] to learn more.
Procedure API access
The API allows for programmable access to procedures. Learn more about the procedures’ fields and data structure on the Procedure API page.